No, unfortunately, this is not possible because SmartPOP2Exchange uses the SMTP protocol to deliver emails to the target server. Therefore, SmartPOP2Exchange has no information about which folders exist on the target system. Neither the SMTP protocol nor the email standard provides a way to specify which folder an email should be placed in.
As an alternative, you can set up filter rules or scripts on the target server to move emails to the desired folders after delivery. For more information, please refer to your email server's documentation.